Table of Contents
What are protein interaction networks?
Definition. Protein–protein interaction networks are the networks of protein complexes formed by biochemical events and/or electrostatic forces and that serve a distinct biological function as a complex. The protein interactome describes the full repertoire of a biological system’s protein–protein interactions (PPIs).
What is clustering in network analysis?
Clustering, is the task of assigning a set of objects to communities such that objects in the same community are more similar to each other than to those in other communities. In network clustering, the literature defines “similarity” based on topology.
What is protein network mapping?
Protein–protein interaction mapping identifies a putative function to uncharacterized proteins and can provide information, such as interacting domains, to direct further experiments.
How does protein protein interaction work?
Proteins bind to each other through a combination of hydrophobic bonding, van der Waals forces, and salt bridges at specific binding domains on each protein. These domains can be small binding clefts or large surfaces and can be just a few peptides long or span hundreds of amino acids.
Why should we study protein-protein interactions?
Protein-protein interactions (PPIs) play a crucial role in cellular functions and biological processes in all organisms. The identification of protein interactions can lead to a better understanding of infection mechanisms and the development of several medication drugs and treatment optimization.
What is clustering in social networking?
The clustering in social network analysis is different from traditional clustering. It requires grouping objects into classes based on their links as well as their attributes. While traditional clustering algorithms group objects only based on objects’ similarity, and it can’t be applied to social network analysis.
What are social clusters?
A social cluster – an innovative means of creating and implementing social innovations that are targeted at solving social and economic problems relevant to the society.
What does high clustering coefficient mean?
Specifically, the clustering coefficient is a measure of the density of the 1.5-degree egocentric network for each vertex. When these connections are dense, the clustering coefficient is high. If your “friends” (alters) all know each other, you have a high clustering coefficient.
How do you Analyse Protein-Protein Interaction?
Characterizing protein–protein interactions through methods such as co-immunoprecipitation (co-IP), pull-down assays, crosslinking, label transfer, and far–western blot analysis is critical to understand protein function and the biology of the cell.
How is Protein-Protein Interaction determined?
Dual polarisation interferometry (DPI) can be used to measure protein–protein interactions. DPI provides real-time, high-resolution measurements of molecular size, density and mass. While tagging is not necessary, one of the protein species must be immobilized on the surface of a waveguide.